Thanks to Roger and iubito for their replies.
Roger's comment got me looking at the way I set up the alias for the wiki directory because I thought I typed in too many slashes but they were correct. However, in setting up the alias for the wiki directory, I copied the directives from the ScriptAlias for the cgi-bin instead of using the Alias directive if you check
http://eix.dyndns.org/wiki/index.php/Main_Page
Now it shows the default logo and looks like the Mediawiki pages. Thank you very much!!!!!!!!
I also check my browser history and sure enough there were urls with // I guess I typed them in because if you check this it now gives a listing of the js file
http://eix.dyndns.org/wiki/skins/common/wikibits.js
I have learned two things in this battle: One don't work late, you make too many mistakes when tired and Two be very careful about copying script, make sure it is exactly the same type of application I am trying to duplicate. I am not exactly new to Linux but setting up this new server has shown me I need to get a book to read to get a firmer basis on how things work just reading documentation online is not enough. Anyway I really appreciate the time and thoughtfulness of your replies.
mediawiki-l@lists.wikimedia.org