Hi,
Try the following code at: http://parsoid.wmflabs.org/_rtform/
===================== {{Geobox|River | country = Kyrgyzstan | mouth_lat_d = 46| mouth_lat_m = 09| mouth_lat_s = 15| mouth_lat_NS =N | mouth_long_d =60 | mouth_long_m =52 | mouth_long_s =25 | mouth_long_EW =E | discharge = 1180 | discharge_note = foobar1<ref>http://myref.url</ref> }}
foobar2<ref>http://myref.url</ref>
== References == <references/> =====================
As a result, I get a click-able link only for the second reference, not for first, although both are absolutely identical: "http://myref.url.
Looks like a small bug to me.
Emmanuel