Hi
Since a few days I'm getting weird errors when submitting tasks.
My Cronjob calls "/home/mazder/public_html/replicate-sequences/update-submit.sh" which conains the following command:
qcronsub -l h_rt=0:05:00 -l virtual_free=100M -l arch=* -l sql-user-m=1 -N mazder-replicate-sequences -m as -o '/home/mazder/public_html/replicate-sequences/sge' '/home/mazder/public_html/replicate-sequences/update-run.sh'
Most of these calls produce the error below, which seems not to be an error in my code as I neither use xml nor python.
Do you have any Idea what's going wrong? Peter
-------- Original-Nachricht -------- Betreff: Output from "cron" command Datum: Tue, 14 May 2013 08:40:00 +0000 (UTC) Von: mazder@toolserver.org (mazder) An: mazder@toolserver.org
Your "cron" job on clematis /home/mazder/public_html/replicate-sequences/update-submit.sh
produced the following output:
error: JSV stderr: Traceback (most recent call last): error: JSV stderr: File "/sge/GE/bin/sol-amd64/qjobtest", line 108, in <module> error: JSV stderr: dom = minidom.parse(child_stdout) error: JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/minidom.py", line 1915, in parse error: JSV stderr: return expatbuilder.parse(file) error: JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py", line 930, in parse error: JSV stderr: result = builder.parseFile(file) error: JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py", line 207, in parseFile error: JSV stderr: parser.Parse(buffer, 0) error: JSV stderr: xml.parsers.expat.ExpatError: syntax error: line 1, column 0 Unable to run job: JSV stderr: Traceback (most recent call last): JSV stderr: File "/sge/GE/bin/sol-amd64/qjobtest", line 108, in <module> JSV stderr: dom = minidom.parse(child_stdout) JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/minidom.py", line 1915, in parse JSV stderr: return expatbuilder.parse(file) JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py", line 930, in parse JSV stderr: result = builder.parseFile(file) JSV stderr: File "/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py", line 207, in parseFile JSV stderr: parser.Parse(buffer, 0) JSV stderr: xml.parsers.expat.ExpatError: syntax error: line 1, column 0 JSV stderr is - xml.parsers.expat.ExpatError: syntax error: line 1, column 0. Exiting.