Hi
Since a few days I'm getting weird errors when submitting tasks.
My Cronjob calls
"/home/mazder/public_html/replicate-sequences/update-submit.sh" which
conains the following command:
qcronsub -l h_rt=0:05:00 -l virtual_free=100M -l arch=* -l sql-user-m=1
-N mazder-replicate-sequences -m as -o
'/home/mazder/public_html/replicate-sequences/sge'
'/home/mazder/public_html/replicate-sequences/update-run.sh'
Most of these calls produce the error below, which seems not to be an
error in my code as I neither use xml nor python.
Do you have any Idea what's going wrong?
Peter
-------- Original-Nachricht --------
Betreff: Output from "cron" command
Datum: Tue, 14 May 2013 08:40:00 +0000 (UTC)
Von: mazder(a)toolserver.org (mazder)
An: mazder(a)toolserver.org
Your "cron" job on clematis
/home/mazder/public_html/replicate-sequences/update-submit.sh
produced the following output:
error: JSV stderr: Traceback (most recent call last):
error: JSV stderr: File "/sge/GE/bin/sol-amd64/qjobtest", line 108, in
<module>
error: JSV stderr: dom = minidom.parse(child_stdout)
error: JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/minidom.py", line
1915, in parse
error: JSV stderr: return expatbuilder.parse(file)
error: JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py",
line 930, in parse
error: JSV stderr: result = builder.parseFile(file)
error: JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py",
line 207, in parseFile
error: JSV stderr: parser.Parse(buffer, 0)
error: JSV stderr: xml.parsers.expat.ExpatError: syntax error: line 1,
column 0
Unable to run job: JSV stderr: Traceback (most recent call last):
JSV stderr: File "/sge/GE/bin/sol-amd64/qjobtest", line 108, in <module>
JSV stderr: dom = minidom.parse(child_stdout)
JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/minidom.py", line
1915, in parse
JSV stderr: return expatbuilder.parse(file)
JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py",
line 930, in parse
JSV stderr: result = builder.parseFile(file)
JSV stderr: File
"/opt/ts/python/2.7/lib/python2.7/site-packages/_xmlplus/dom/expatbuilder.py",
line 207, in parseFile
JSV stderr: parser.Parse(buffer, 0)
JSV stderr: xml.parsers.expat.ExpatError: syntax error: line 1, column 0
JSV stderr is - xml.parsers.expat.ExpatError: syntax error: line 1,
column 0.
Exiting.