I have made the file with duplicates removed and only the titles shown (not the numbers). It can be found at http://hyperfileshare.com/d/bce7ef1d.
The following wikis have the following number of pages that will get problems:
afwiki: 19 anwiki: 1 arwiki: 20 be_x_oldwiki: 1 bgwiki: 6 bnwiki: 6 brwiki: 6 bswiki: 3 bswiktionary: 1 cawiki: 172 commonswiki: 36 cswiki: 113 cswikisource: 1 dawikibooks: 2 dewiki: 239 dewikibooks: 10 dewikiquote: 1 dewikisource: 228 dewikiversity: 15 dewiktionary: 4 emlwiki: 1 enwiki: 12917 enwikibooks: 67 enwikinews: 2 enwikiquote: 1 enwiktionary: 103 eowiki: 141 eswiki: 158 eswikibooks: 8 euwiki: 1 fawiki: 1 fiwiki: 1 frwiki: 1540 glwiki: 2 hewiki: 13 hewikisource: 15 hiwiki: 3 hrwiki: 91 hsbwiki: 542 huwiki: 196 iawiki: 1 idwiki: 6 incubatorwiki: 1 itwiki: 356 itwikibooks: 2 jawiki: 4 jawikibooks: 1 kawiki: 8 kkwiki: 9 kshwiki: 1 lbewiki: 7 lvwiki: 203 mediawikiwiki: 5 metawiki: 557 mkwiki: 13 mlwiki: 1 mswiki: 19 newwiki: 3 nlwiki: 35 nnwiki: 1 nowiki: 31 oswiki: 7 plwiki: 105 plwikinews: 1 plwiktionary: 1 pswiki: 1 ptwiki: 83 ptwiktionary: 21 quwiki: 7 rowiki: 64 rowiktionary: 830 ruwiki: 4064 sdwiktionary: 1 simplewiki: 54 skwiki: 20 slwiki: 26 sqwiki: 1 srwiki: 3 svwiki: 1 tawiki: 2 tewiki: 17 thwiki: 56 trwiki: 286 ukwiki: 64 vowiki: 2 zh_min_nanwikibooks: 1 zh_yuewiki: 1 zhwiki: 1108