Dear all, I thank you for your efforts. As shown in our research paper, many types of Biomedical entities and relations are not supported by Wikidata. When I saw OBO Library known to include many CC0 ontologies related to the medical field, I found that some of the ontologies support missing types of biomedical items and statements. http://www.ontobee.org/. I knew that several OBO ontologies have already been integrated to Wikidata. I ask if there is a work to include all OBO library ontologies to Wikidata. As well, I ask if there is already a work to automatically update Wikidata if OBO ontologies are updated. Yours Sincerely, Houcemeddine Turki (he/him) Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia GLAM and Education Coordinator, Wikimedia TN User Group Member, Wiki Project Med Member, WikiIndaba Steering Committee Member, Wikimedia and Library User Group Steering Committee ____________________ +21629499418
-------- Message d'origine -------- De : "Houcemeddine A. Turki" turkiabdelwaheb@hotmail.fr Date : 2019/09/29 11:50 (GMT+01:00) À : "Houcemeddine A. Turki" turkiabdelwaheb@hotmail.fr Objet : Important, Integrating OBO Library into Wikidata database
Dear all, I thank you for your efforts. As shown in our research paper, many types of Biomedical entities and relations are not supported by Wikidata. When I saw OBO Library known to include many CC0 ontologies related to the medical field, I found that some of the ontologies support missing types of biomedical items and statements. http://www.ontobee.org/. I knew that several OBO ontologies have already been integrated to Wikidata. I ask if there is a work to include all OBO library ontologies to Wikidata. As well, I ask if there is already a work to automatically update Wikidata if OBO ontologies are updated. Yours Sincerely, Houcemeddine Turki (he/him) Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia GLAM and Education Coordinator, Wikimedia TN User Group Member, Wiki Project Med Member, WikiIndaba Steering Committee Member, Wikimedia and Library User Group Steering Committee ____________________ +21629499418
Hello,
The Gene Wiki team [1] is currently loading and synchronizing several biomedical ontologies from the OBO Foundry [2]. We do have somewhat generalizable code for creating Wikidata importers from OWL files [3]. For the moment, we have held back doing mass imports of *all* CC0 ontologies because each bot still requires customization and maintenance, and keeping the synchronization current is a continual challenge [4]. (And, as a general principle we only import resources that we ourselves have a tangible use for to avoid "stamp collecting".) If there are specific ontologies that you are interested in importing, we are happy to coordinate to avoid duplication of effort.
Best, -andrew
[1]: https://www.wikidata.org/wiki/Wikidata:WikiProject_Gene_Wiki [2]: http://www.obofoundry.org/ [3]: https://github.com/SuLab/scheduled-bots/tree/master/scheduled_bots/ontology [4]: http://jenkins.sulab.org/
On Sun, Sep 29, 2019 at 11:19 AM Houcemeddine A. Turki < turkiabdelwaheb@hotmail.fr> wrote:
Dear all, I thank you for your efforts. As shown in our research paper, many types of Biomedical entities and relations are not supported by Wikidata. When I saw OBO Library known to include many CC0 ontologies related to the medical field, I found that some of the ontologies support missing types of biomedical items and statements. http://www.ontobee.org/. I knew that several OBO ontologies have already been integrated to Wikidata. I ask if there is a work to include all OBO library ontologies to Wikidata. As well, I ask if there is already a work to automatically update Wikidata if OBO ontologies are updated. Yours Sincerely, Houcemeddine Turki (he/him) Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia GLAM and Education Coordinator, Wikimedia TN User Group Member, Wiki Project Med Member, WikiIndaba Steering Committee Member, Wikimedia and Library User Group Steering Committee ____________________ +21629499418
-------- Message d'origine -------- De : "Houcemeddine A. Turki" turkiabdelwaheb@hotmail.fr Date : 2019/09/29 11:50 (GMT+01:00) À : "Houcemeddine A. Turki" turkiabdelwaheb@hotmail.fr Objet : Important, Integrating OBO Library into Wikidata database
Dear all, I thank you for your efforts. As shown in our research paper, many types of Biomedical entities and relations are not supported by Wikidata. When I saw OBO Library known to include many CC0 ontologies related to the medical field, I found that some of the ontologies support missing types of biomedical items and statements. http://www.ontobee.org/. I knew that several OBO ontologies have already been integrated to Wikidata. I ask if there is a work to include all OBO library ontologies to Wikidata. As well, I ask if there is already a work to automatically update Wikidata if OBO ontologies are updated. Yours Sincerely, Houcemeddine Turki (he/him) Medical Student, Faculty of Medicine of Sfax, University of Sfax, Tunisia GLAM and Education Coordinator, Wikimedia TN User Group Member, Wiki Project Med Member, WikiIndaba Steering Committee Member, Wikimedia and Library User Group Steering Committee ____________________ +21629499418 _______________________________________________ Wikidata mailing list Wikidata@lists.wikimedia.org https://lists.wikimedia.org/mailman/listinfo/wikidata