Yes.  e.g. according to that copyright statement from uniprot our actions are currently in violation.  We need to make it clear that an agreement has been reached and have that hosted somewhere the world can see.  

On Wed, Oct 5, 2016 at 2:26 PM, Federico Leva (Nemo) <nemowiki@gmail.com> wrote:
Benjamin Good, 05/10/2016 19:44:
As a specific example, we have informal (e.g. an email to us) permission
to import data from the Disease Ontology [2] and UniProt [3] but would
like to make those informal agreements 'official' and public.

Just make them add such a note to http://www.uniprot.org/help/license or equivalent? E.g. http://www.beic.it/it/articoli/copyright releases some parts in CC-0.

Nemo


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